Datasets generated by the lab are publicly available on Array Express. Here you can find RNA-seq, ChIP-seq and microarray raw data, as well as experimental details for each dataset. The links below will take you straight into each study. To access the list of samples available in each study go to "Samples" and for experimental details go to "Protocols".

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Downloading data:

You can download the files in fastq.gz format locally by clicking on the FASTQ link.

Alternatively you can click on the ENA link to download fastq files (or SRA)  directly into galaxy or via ftp into your work cluster (recommended).  More info on downloading data from the web into a cluster via ftp here. 

As an example this would look like: wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/001/ERR2093221/*

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Submitting your data:

Prior to publication, you are required to submit your NGS data to a public repository. Please bear in mind that this may take a few days/weeks, and should be done in well in advance to allow time to attend to any submission queries. To submit data on ArrayExpress, you will need to upload it via Annotare. You will be asked to supply some experimental information regarding the protocols used to obtain the samples in the datasets. You are required to upload your raw data (FASTQ files), but in addition you may also upload processed data (e.g. BAM). For more information on this process click here.